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R statistical software
Show available R packages:
apt-cache search ^r-.*
Log in as root
cd /root
Setting the repository
It is convenient to set the repository. It saves some work
See R-Bloggers and look for Setting the repository
.
Replace the url with one from the Cran R project mirrors which suits you best. For The Netherlands http://cran-mirror.cs.uu.nl
can be used
Install ed
a simple text editor needed during the installation of R
apt-get install ed
Edit:
nano /etc/apt/sources.list
Add ( or an other mirror from Cran R project mirrors ):
deb http://cran-mirror.cs.uu.nl/bin/linux/debian wheezy-cran3/ to /etc/apt/sources.list and save and close the file sources.list apt-get update
If there is an gpg error then copy the last 8 character of the key an replace them in the commands below. Repeat as long as an error occurs:
gpg --keyserver pgp.mit.edu --recv-keys E084DAB9 gpg --armor --export E084DAB9 | apt-key add - apt-get update gpg --keyserver pgp.mit.edu --recv-keys 381BA480 gpg --armor --export 381BA480 | apt-key add - apt-get update repeat the previous 3 lines if an error occurs apt-get upgrade apt-get autoremove apt-key adv --keyserver keys.gnupg.net --recv-key 381BA480
Install R
apt-get install r-base
Install openblas ( can speed up calculations )
apt-get install libopenblas-base
Start R
R
Update R
> update.packages(.libPaths()[1], checkBuilt=TRUE)
Again choose a mirror from External Link and press OK Install and update R commander:
> install.packages("Rcmdr") > library(Rcmdr) > q()
and again
R > library(Rcmdr) Close R commander (file | Exit | From Commander ) > q()
and repeat as long as new updates are found or updates are not installed due to errors.
Running library(Rcmdr)
resulted in a request to install two additional packages: rgl
and XLConnect
This resulted in R header file and java errors which have not been solved so far.
Log out from root
As normal user do:
R
You are ready to use R
You can start R Commander with
> library(Rcmdr)
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